SMTL ID : 5u4b.1

Wild-type Transthyretin in complex with 3-[(1E)-2-(4-Hydroxyphenyl)ethenyl]benzoic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

4 x XOS: 3-[(E)-2-(4-hydroxyphenyl)ethenyl]benzoic acid(Non-covalent)

XOS.1: 9 residues within 4Å: Chain A: K.16, A.109, L.111, S.118 Chain C: K.16, L.18, L.111, S.118 Ligands: XOS.3 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.16, C:L.18, C:L.111, A:A.109, A:L.111 Hydrogen bonds: C:S.118, A:S.118, A:S.118 Salt bridges: C:K.16, A:K.16 XOS.2: 9 residues within 4Å: Chain B: K.16, A.109, L.111, S.118 Chain D: K.16, L.18, L.111, S.118 Ligands: XOS.4 9 PLIP interactions: 3 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:K.16, D:L.18, B:K.16, B:L.111, B:L.111 Hydrogen bonds: D:S.118, B:S.118, B:S.118 Salt bridges: B:K.16 XOS.3: 9 residues within 4Å: Chain A: K.16, L.18, L.111, S.118 Chain C: K.16, A.109, L.111, S.118 Ligands: XOS.1 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:A.109, C:L.111, A:K.16, A:L.18, A:L.111 Hydrogen bonds: C:S.118, C:S.118, A:S.118 Salt bridges: C:K.16, A:K.16 XOS.4: 9 residues within 4Å: Chain B: K.16, L.18, L.111, S.118 Chain D: K.16, A.109, L.111, S.118 Ligands: XOS.2 9 PLIP interactions: 6 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:K.16, D:L.111, D:L.111, B:K.16, B:L.18 Hydrogen bonds: D:S.118, D:S.118, B:S.118 Salt bridges: D:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, T.P. et al., Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation. J. Med. Chem. (2017)

Release Date

2017-09-27

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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