SMTL ID : 5u4f.1

Wild-type Transthyretin in complex with 1,1'-(1E)-(1,2-Ethenediyl)bis[2-chloro-4-boronic acid]benzene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x IWW: [(E)-ethene-1,2-diylbis(3-chloro-4,1-phenylene)]diboronic acid(Covalent)

IWW.1: 16 residues within 4Å: Chain A: K.16, L.18, A.109, L.111, S.118 Chain C: M.14, K.16, L.18, E.55, T.107, A.109, A.110, L.111, S.118, T.120 Ligands: IWW.3 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.18, A:L.111, A:L.111, C:K.16, C:A.109 Hydrogen bonds: A:K.16, A:S.118, C:K.16, C:K.16 IWW.2: 13 residues within 4Å: Chain B: K.16, L.18, A.109, L.111, S.118 Chain D: K.16, L.18, T.107, A.109, L.111, S.118, T.120 Ligands: IWW.4 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:K.16, D:A.109, D:L.111, B:L.18, B:L.111 IWW.3: 16 residues within 4Å: Chain A: M.14, K.16, L.18, E.55, T.107, A.109, A.110, L.111, S.118, T.120 Chain C: K.16, L.18, A.109, L.111, S.118 Ligands: IWW.1 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:L.18, C:L.111, C:L.111, A:K.16, A:A.109 Hydrogen bonds: C:K.16, A:K.16, A:K.16, A:S.118 IWW.4: 13 residues within 4Å: Chain B: K.16, L.18, T.107, A.109, L.111, S.118, T.120 Chain D: K.16, L.18, A.109, L.111, S.118 Ligands: IWW.2 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:K.16, B:A.109, B:L.111, D:L.18, D:L.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, T.P. et al., Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation. J. Med. Chem. (2017)

Release Date

2017-09-27

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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