- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 11 x NI: NICKEL (II) ION(Non-covalent)
NI.2: 2 residues within 4Å:- Chain A: H.190
- Ligands: SO4.6
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.190
NI.3: 3 residues within 4Å:- Chain A: D.231
- Chain B: D.231
- Chain C: D.231
5 PLIP interactions:1 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: C:D.231, A:D.231, A:D.231, B:D.231, H2O.1
NI.9: 3 residues within 4Å:- Chain B: H.88, Y.99
- Ligands: SO4.11
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.88
NI.13: 1 residues within 4Å:- Chain C: H.190
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.190, H2O.3, H2O.3
NI.14: 1 residues within 4Å:- Chain C: H.88
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.88
NI.18: 3 residues within 4Å:- Chain D: D.231
- Chain E: D.231
- Chain F: D.231
5 PLIP interactions:2 interactions with chain E, 2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: E:D.231, E:D.231, D:D.231, D:D.231, H2O.3
NI.19: 1 residues within 4Å:- Chain D: H.88
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.88, H2O.3
NI.20: 1 residues within 4Å:- Chain D: H.190
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.190, H2O.3
NI.24: 1 residues within 4Å:- Chain E: H.88
2 PLIP interactions:1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:H.88, H2O.3
NI.27: 2 residues within 4Å:- Chain F: H.190
- Ligands: SO4.31
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:H.190
NI.28: 2 residues within 4Å:- Chain F: H.88, Y.99
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:H.88, H2O.4, H2O.4
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: S.26, G.28, D.30, S.31, G.123
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.26, A:G.28, A:D.30, A:S.31
SO4.5: 5 residues within 4Å:- Chain A: K.90, L.188, T.189, H.190
- Ligands: SO4.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.188, A:H.190
- Salt bridges: A:K.90, A:H.190
SO4.6: 4 residues within 4Å:- Chain A: D.82, H.190
- Ligands: NI.2, SO4.5
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.190
SO4.7: 6 residues within 4Å:- Chain A: W.97, M.124, R.133, K.137, A.138, R.139
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.138, A:R.139
- Water bridges: A:Y.105
- Salt bridges: A:R.133, A:R.139
SO4.10: 6 residues within 4Å:- Chain B: S.26, G.28, I.29, D.30, S.31, G.123
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.26, B:G.28, B:D.30, B:D.30, B:S.31, B:S.31
SO4.11: 4 residues within 4Å:- Chain B: H.88, D.95, Y.99
- Ligands: NI.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.99
- Salt bridges: B:H.88
SO4.15: 6 residues within 4Å:- Chain C: S.26, G.28, I.29, D.30, S.31, G.123
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:S.26, C:G.28, C:D.30, C:D.30, C:S.31, C:S.31, C:G.123
SO4.16: 3 residues within 4Å:- Chain C: K.90, T.189, H.190
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.190
- Salt bridges: C:K.90, C:H.190
SO4.21: 5 residues within 4Å:- Chain D: S.26, G.28, D.30, S.31, G.123
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.26, D:G.28, D:D.30, D:D.30, D:S.31
SO4.22: 4 residues within 4Å:- Chain D: K.90, L.188, T.189, H.190
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.190
- Salt bridges: D:K.90, D:H.190
SO4.25: 4 residues within 4Å:- Chain E: S.26, G.28, D.30, S.31
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:S.26, E:G.28, E:G.28, E:D.30, E:D.30, E:S.31
SO4.29: 5 residues within 4Å:- Chain F: S.26, G.28, D.30, S.31, G.123
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:S.26, F:G.28, F:D.30, F:S.31, F:S.31
SO4.30: 5 residues within 4Å:- Chain F: K.90, L.188, T.189, H.190
- Ligands: SO4.31
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:H.190
- Salt bridges: F:K.90, F:H.190
SO4.31: 5 residues within 4Å:- Chain F: L.84, K.90, H.190
- Ligands: NI.27, SO4.30
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:L.84
- Salt bridges: F:K.90, F:H.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fellner, M. et al., Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-08-23
- Peptides
- Lactate racemization operon protein LarE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 11 x NI: NICKEL (II) ION(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fellner, M. et al., Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-08-23
- Peptides
- Lactate racemization operon protein LarE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F