- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.55 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x CO: COBALT (II) ION(Non-covalent)
CO.2: 2 residues within 4Å:- Chain A: H.190
- Ligands: SO4.5
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.190, H2O.1, H2O.1, H2O.1
CO.3: 3 residues within 4Å:- Chain A: D.231
- Chain B: D.231
- Chain C: D.231
5 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:D.231, C:D.231, B:D.231, B:D.231, H2O.1
CO.10: 1 residues within 4Å:- Chain C: H.190
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:H.190, H2O.1, H2O.1, H2O.1
CO.14: 3 residues within 4Å:- Chain D: D.231
- Chain E: D.231
- Chain F: D.231
5 PLIP interactions:2 interactions with chain E, 1 interactions with chain F, 1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: E:D.231, E:D.231, F:D.231, D:D.231, H2O.1
CO.15: 1 residues within 4Å:- Chain D: H.190
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:H.190, H2O.1, H2O.1, H2O.1
CO.20: 2 residues within 4Å:- Chain F: D.82, H.190
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:D.82, F:H.190, H2O.1, H2O.1
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: S.26, G.28, D.30, S.31, G.123
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.26, A:G.28, A:D.30, A:S.31, A:G.123
SO4.5: 4 residues within 4Å:- Chain A: L.188, T.189, H.190
- Ligands: CO.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.190
- Salt bridges: A:H.190
SO4.6: 4 residues within 4Å:- Chain A: W.97, K.137, A.138, R.139
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.138, A:R.139
- Salt bridges: A:R.139
SO4.8: 6 residues within 4Å:- Chain B: S.26, G.28, I.29, D.30, S.31, G.123
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.26, B:G.28, B:D.30, B:D.30, B:S.31, B:S.31, B:G.123
SO4.11: 3 residues within 4Å:- Chain C: K.90, T.189, H.190
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.190
- Salt bridges: C:K.90, C:H.190
SO4.12: 5 residues within 4Å:- Chain C: S.26, G.28, D.30, S.31, G.123
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.30, C:D.30, C:S.31, C:G.123
SO4.16: 5 residues within 4Å:- Chain D: S.26, G.28, D.30, S.31, G.123
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:S.26, D:S.26, D:G.28, D:D.30, D:D.30, D:S.31, D:S.31
SO4.17: 3 residues within 4Å:- Chain D: K.90, T.189, H.190
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.190
- Salt bridges: D:K.90, D:H.190
SO4.21: 6 residues within 4Å:- Chain F: S.26, G.28, I.29, D.30, S.31, G.123
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.28, F:G.28, F:D.30, F:S.31
SO4.22: 4 residues within 4Å:- Chain F: K.90, L.188, T.189, H.190
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:H.190
- Water bridges: F:K.90, F:K.90
- Salt bridges: F:K.90, F:H.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fellner, M. et al., Crystallographic characterization of a tri-Asp metal-binding site at the three-fold symmetry axis of LarE. Sci Rep (2020)
- Release Date
- 2019-11-06
- Peptides
- ATP-dependent sacrificial sulfur transferase LarE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.55 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x CO: COBALT (II) ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fellner, M. et al., Crystallographic characterization of a tri-Asp metal-binding site at the three-fold symmetry axis of LarE. Sci Rep (2020)
- Release Date
- 2019-11-06
- Peptides
- ATP-dependent sacrificial sulfur transferase LarE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F