SMTL ID : 6dg3.1 (1 other biounit)

LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, in complex with caesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

homo-hexamer

Ligands

6 x CS: CESIUM ION(Non-covalent)

CS.1: 4 residues within 4Å: Chain A: N.53, S.54, F.57, D.59 No protein-ligand interaction detected (PLIP) CS.3: 3 residues within 4Å: Chain B: S.54, F.57, D.59 No protein-ligand interaction detected (PLIP) CS.5: 3 residues within 4Å: Chain C: E.141, A.144, S.146 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.141 CS.7: 4 residues within 4Å: Chain D: N.53, S.54, F.57, D.59 No protein-ligand interaction detected (PLIP) CS.9: 4 residues within 4Å: Chain E: N.53, S.54, F.57, D.59 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.59 CS.11: 4 residues within 4Å: Chain F: N.53, S.54, F.57, D.59 No protein-ligand interaction detected (PLIP)

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: C.176, S.180, R.212, R.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.180 Salt bridges: A:R.212, A:R.214 PO4.4: 4 residues within 4Å: Chain B: C.176, S.180, R.212, R.214 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.180 Salt bridges: B:R.212, B:R.214 PO4.6: 5 residues within 4Å: Chain C: C.176, S.180, R.212, R.214, S.260 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.180, C:S.180 Salt bridges: C:R.212, C:R.214 PO4.8: 4 residues within 4Å: Chain D: C.176, S.180, R.212, R.214 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.180 Salt bridges: D:R.212, D:R.214 PO4.10: 5 residues within 4Å: Chain E: C.176, S.180, R.181, R.212, R.214 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.180, E:S.180 Salt bridges: E:R.212, E:R.214 PO4.12: 4 residues within 4Å: Chain F: C.176, S.180, R.212, R.214 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:S.180, F:S.180 Salt bridges: F:R.212, F:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M., Unique cesium-binding sites in proteins, a case study with the sacrificial sulfur transferase LarE. J Life Sci (2021)

Release Date

2019-05-22

Peptides

Pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
J

D
L

E
I

F
K

Pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase

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