SMTL ID : 5utp.1 (1 other biounit)

Crystal structure of Burkholderia cenocepacia family 3 glycoside hydrolase (NagZ) bound to N-ethylbutyryl-PUGNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 8M7: N-[(2Z,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(phenylcarbamoyl)oxy]imino}tetrahydro-2H-pyran-3-yl]-2-ethylbutanamide(Non-covalent)

8M7.1: 20 residues within 4Å: Chain A: I.42, F.44, D.73, E.75, R.81, F.131, D.136, V.144, I.145, R.148, K.178, H.179, H.183, I.223, D.261, D.262, S.264, M.265, L.290, C.292 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.145, A:H.183 Hydrogen bonds: A:R.148, A:R.148, A:K.178, A:H.179, A:D.261, A:D.262, A:D.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vadlamani, G. et al., Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress beta-lactam antibiotic resistance. Protein Sci. (2017)

Release Date

2017-04-19

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-hexosaminidase

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