SMTL ID : 5utr.2 (2 other biounits)

Crystal structure of Burkholderia cenocepacia family 3 glycoside hydrolase (NagZ) bound to (3S,4R,5R,6S)-3-butyryl-4,5,6-trihydroxyazepane

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x 8MP: N-[(3S,4R,5R,6S)-4,5,6-trihydroxyazepan-3-yl]butanamide(Non-covalent)

8MP.1: 20 residues within 4Å: Chain A: I.42, F.44, D.73, R.81, F.131, V.144, I.145, R.148, K.178, H.179, H.183, D.189, S.190, H.191, I.223, D.261, D.262, M.265, L.290, C.292 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.144, A:V.144 Hydrogen bonds: A:R.148, A:R.148, A:K.178, A:H.179, A:D.261, A:D.261, A:D.262 Water bridges: A:R.81, A:H.191, A:H.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vadlamani, G. et al., Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress beta-lactam antibiotic resistance. Protein Sci. (2017)

Release Date

2017-04-19

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-hexosaminidase

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