SMTL ID : 5v4r.3 (2 other biounits)

Crystal structure of LARP1-unique domain DM15 bound to m7GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

1 x MGT: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

MGT.1: 13 residues within 4Å: Chain A: R.95, Y.99, Y.127, K.131 Chain B: R.95, S.98, Y.99, E.102, Y.127, K.131, A.134, F.135, Y.138 20 PLIP interactions: 7 interactions with chain A, 13 interactions with chain B Hydrogen bonds: A:R.95, A:Y.99, A:Y.99, A:Y.127, A:Y.127, B:R.95, B:S.98, B:Y.99, B:Y.99, B:Y.127, B:Y.127, B:K.131 Salt bridges: A:K.131, A:K.131, B:E.102, B:K.131, B:K.131 Water bridges: B:K.131 pi-Stacking: B:Y.138, B:Y.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lahr, R.M. et al., La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs. Elife (2017)

Release Date

2017-04-19

Peptides

La-related protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

La-related protein 1

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