SMTL ID : 5v87.2 (1 other biounit)

Crystal structure of LARP1-unique domain DM15 bound to m7GpppC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x 91P: [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)

91P.1: 12 residues within 4Å: Chain A: F.60, R.63, R.95, S.98, Y.99, E.102, Y.127, E.130, K.131, A.134, F.135, Y.138 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.63, A:R.63, A:R.95, A:S.98, A:S.98 Water bridges: A:E.102, A:K.131, A:K.131 Salt bridges: A:E.102, A:K.131 pi-Stacking: A:Y.99, A:Y.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lahr, R.M. et al., La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs. Elife (2017)

Release Date

2017-04-19

Peptides

La-related protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

La-related protein 1

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