SMTL ID : 5v5y.1

CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH MK1775

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 8X7: 1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one(Non-covalent)

8X7.1: 19 residues within 4Å: Chain A: E.17, I.19, G.20, F.24, V.27, A.40, I.41, K.42, V.74, I.88, N.90, E.91, Y.92, C.93, N.94, G.96, D.100, F.147, D.177 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.19, A:I.19, A:V.27, A:V.27, A:A.40, A:K.42, A:K.42, A:Y.92, A:F.147 Hydrogen bonds: A:N.90, A:C.93, A:C.93, A:D.177 Salt bridges: A:D.100

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: K.142, S.144, D.193, R.195, R.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144, A:R.195 DMS.3: 4 residues within 4Å: Chain A: Q.69, S.71, M.172, K.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.69, A:K.174

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: H.208, K.211, P.268, E.269 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.208, A:K.211 EDO.5: 3 residues within 4Å: Chain A: H.208, E.269 Ligands: EDO.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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