SMTL ID : 5vb5.1

X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with an inverse agonist and SRC2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: C.123, Y.126, S.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.123 Water bridges: A:S.165

1 x 92A: N-[(2R)-3-(4-{[3-(4-chlorophenyl)propanoyl]amino}phenyl)-1-(4-methylpiperidin-1-yl)-1-oxopropan-2-yl]-4-methylpentanamide(Non-covalent)

92A.2: 19 residues within 4Å: Chain A: Q.43, W.74, C.77, H.80, L.81, V.118, R.121, M.122, R.124, A.125, F.135, F.145, L.148, L.153, I.154, I.157, H.236, Y.259, F.263 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.74, A:L.81, A:L.81, A:L.81, A:V.118, A:R.121, A:F.135, A:L.148, A:L.153, A:H.236, A:Y.259 Hydrogen bonds: A:H.236 Water bridges: A:Q.43, A:A.84 pi-Stacking: A:H.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structural studies unravel the active conformation of apo ROR gamma t nuclear receptor and a common inverse agonism of two diverse classes of ROR gamma t inhibitors. J. Biol. Chem. (2017)

Release Date

2017-06-07

Peptides

Nuclear receptor ROR-gamma, SRC2 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma, SRC2 chimera

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