SMTL ID : 5vb7.1

X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with an agonist and SRC2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: C.123, Y.126, S.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.165

1 x 921: N-methyl-N'-(3-methylbut-2-en-1-yl)-N'-(3-phenoxyphenyl)-N-[trans-4-(pyridin-4-yl)cyclohexyl]urea(Non-covalent)

921.2: 21 residues within 4Å: Chain A: C.42, Q.43, L.44, L.49, W.74, C.77, H.80, L.81, M.115, V.118, R.121, M.122, R.124, A.125, F.135, F.145, I.154, I.157, F.158, H.236, Y.259 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.44, A:W.74, A:V.118, A:M.122, A:A.125, A:F.145, A:F.145, A:I.154, A:I.157, A:F.158 Hydrogen bonds: A:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structural studies unravel the active conformation of apo ROR gamma t nuclear receptor and a common inverse agonism of two diverse classes of ROR gamma t inhibitors. J. Biol. Chem. (2017)

Release Date

2017-06-07

Peptides

Nuclear receptor ROR-gamma, SRC2 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma, SRC2 chimera

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