SMTL ID : 5vql.1

X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: C.123, Y.126, S.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.126

1 x 9GS: 5'-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-N-{[4-(ethylsulfonyl)phenyl]methyl}spiro[cyclopentane-1,3'-pyrrolo[3,2-b]pyridine]-1'(2'H)-carboxamide(Non-covalent)

9GS.2: 22 residues within 4Å: Chain A: C.42, Q.43, L.44, L.49, C.77, H.80, L.81, M.115, V.118, L.119, R.121, M.122, R.124, A.125, V.133, F.134, F.135, F.145, L.153, I.154, I.157, H.236 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.44, A:L.81, A:R.121, A:A.125, A:V.133, A:F.145, A:F.145, A:I.154, A:I.157, A:I.157 Hydrogen bonds: A:F.134 Water bridges: A:E.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X., X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide. To Be Published

Release Date

2018-05-16

Peptides

Nuclear receptor ROR-gamma, SRC2 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma, SRC2 chimera

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