SMTL ID : 5vb6.1

X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with an inverse agonist and SRC2 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: R.53, C.123, Y.126, S.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.53, A:C.123 Water bridges: A:S.165

1 x 927: N-{3-[(3-methylbut-2-en-1-yl){methyl[trans-4-(pyridin-4-yl)cyclohexyl]carbamoyl}amino]phenyl}benzamide(Non-covalent)

927.2: 21 residues within 4Å: Chain A: C.42, Q.43, L.44, L.49, W.74, C.77, H.80, L.81, V.118, R.121, M.122, R.124, A.125, F.135, F.145, L.153, I.154, I.157, F.158, H.236, Y.259 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.44, A:W.74, A:W.74, A:L.81, A:V.118, A:M.122, A:A.125, A:F.145, A:F.145, A:F.145, A:L.153, A:I.154, A:I.157, A:F.158, A:Y.259 Hydrogen bonds: A:R.124, A:H.236 pi-Stacking: A:H.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structural studies unravel the active conformation of apo ROR gamma t nuclear receptor and a common inverse agonism of two diverse classes of ROR gamma t inhibitors. J. Biol. Chem. (2017)

Release Date

2017-06-07

Peptides

Nuclear receptor ROR-gamma, SRC2 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma, SRC2 chimera

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