SMTL ID : 5vc3.1

CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH BOSUTINIB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x DB8: 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile(Non-covalent)

DB8.1: 22 residues within 4Å: Chain A: E.17, I.19, G.20, V.27, K.29, A.40, K.42, E.60, V.74, N.90, E.91, Y.92, C.93, N.94, G.95, G.96, D.100, S.144, N.145, F.147, D.177 Ligands: EDO.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.19, A:V.27, A:A.40, A:K.42, A:F.147, A:F.147 Hydrogen bonds: A:Y.92, A:C.93 Salt bridges: A:E.17, A:E.17 pi-Stacking: A:F.147 Halogen bonds: A:A.40, A:E.60

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: G.20, S.21, G.22, F.24, G.25, S.26, V.27, K.42 Ligands: DB8.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.25 EDO.3: 3 residues within 4Å: Chain A: S.253, Q.254, E.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.254 EDO.4: 4 residues within 4Å: Chain A: R.43, D.83, D.84, H.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.84 EDO.5: 8 residues within 4Å: Chain A: F.24, N.56, D.140, K.142, D.177, G.179, H.180, E.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.177

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: N.233, G.234, H.238 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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