SMTL ID : 5vd2.1

crystal structure of human WEE1 kinase domain in complex with PF-03814735

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x 34W: N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide(Non-covalent)

34W.1: 20 residues within 4Å: Chain A: E.17, I.19, G.20, S.21, F.24, V.27, K.29, A.40, V.74, N.90, E.91, Y.92, C.93, N.94, G.95, G.96, S.97, D.100, F.147, D.177 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.19, A:F.24, A:V.27, A:A.40, A:Y.92, A:F.147 Hydrogen bonds: A:K.29, A:C.93, A:C.93 Halogen bonds: A:D.177

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: K.211, P.272, S.273, A.276 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.273, A:S.273, A:S.273 Salt bridges: A:K.211

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: R.43, D.83, D.84, H.85 Ligands: CL.4 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.43, H.85 Ligands: CL.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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