SMTL ID : 5vn8.1

Cryo-EM model of B41 SOSIP.664 in complex with fragment antigen binding variable domain of b12

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-mer
Ligands
21 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
9 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
33 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ozorowski, G. et al., Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike. Nature (2017)
Release Date
2017-07-12
Peptides
Envelope glycoprotein gp160: AEI
Envelope glycoprotein gp160: BFJ
b12 Fab heavy chain: CGK
b12 Fab light chain: DHL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
G
E
D
I
E
B
A
F
B
J
C
C
H
G
F
K
I
D
L
H
J
L
K

Envelope glycoprotein gp160

Toggle Identical (AEI)

Envelope glycoprotein gp160

Toggle Identical (BFJ)

b12 Fab heavy chain

Toggle Identical (CGK)

b12 Fab light chain

Toggle Identical (DHL)

Related Entries With Identical Sequence

1hzh.1 | 1n0x.1 | 2ny7.1 | 2ny7.2 | 2ny7.3 | 2ny7.4 | 2ny7.5 | 3ru8.1 | 5vn3.1 | 6ch9.1 | 6edu.1 | 6muf.1 | 6mug.1 | 6okp.1 | 6opn.1 | 6opo.1 | 6opp.1 | 6opq.1 | 6u59.1 | 6x5b.1 | 6x5c.1