SMTL ID : 6edu.1

B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21c and the broadly neutralizing antibody 8ANC195

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 4.06 Å
Oligo State
hetero-3-3-3-3-3-3-3-mer
Ligands
15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
27 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, H. et al., Partially Open HIV-1 Envelope Structures Exhibit Conformational Changes Relevant for Coreceptor Binding and Fusion. Cell Host Microbe (2018)
Release Date
2018-10-17
Peptides
Envelope glycoprotein gp160: ABC
Envelope glycoprotein gp160: DEF
T-cell surface glycoprotein CD4: GHI
21c Fab VH domain: JLN
21c Fab VL domain: KMO
8ANC195 G52K5 Fab VH domain: PRT
8ANC195 G52K5 Fab VL domain: QSU
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
L
L
N
N
K
K
M
M
O
O
P
P
R
R
T
T
Q
Q
S
S
U
U

Envelope glycoprotein gp160

Toggle Identical (ABC)

Envelope glycoprotein gp160

Toggle Identical (DEF)

T-cell surface glycoprotein CD4

Toggle Identical (GHI)

21c Fab VH domain

Toggle Identical (JLN)

21c Fab VL domain

Toggle Identical (KMO)

8ANC195 G52K5 Fab VH domain

Toggle Identical (PRT)

8ANC195 G52K5 Fab VL domain

Toggle Identical (QSU)

Related Entries With Identical Sequence

1g9m.1 | 1g9n.1 | 1gc1.1 | 1rzj.1 | 1rzk.1 | 3j70.1 | 3lmj.1 | 3lqa.1 | 4h8w.1 | 4jm2.1 | 4p9h.1 | 4p9m.1 | 4rqs.1 | 4rqs.2 | 5a7x.1 | 5a8h.1 | 5c7k.1 | 5js9.1 | 5jsa.1 | 5thr.1 | 5vn3.1 | 5vn8.1 | 6ch9.1 | 6cm3.1 | 6muf.1 | 6mug.1 | 6okp.1 | 6opn.1 | 6opo.1 | 6opp.1  more...