SMTL ID : 5vn3.1

Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-3-mer
Ligands
12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ozorowski, G. et al., Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike. Nature (2017)
Release Date
2017-07-12
Peptides
17b Fab light chain: AFK
Envelope glycoprotein gp160: BGL
Envelope glycoprotein gp160: CHM
T-cell surface glycoprotein CD4: DIN
17b Fab heavy chain: EJO
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
F
N
K
O
B
A
G
B
L
D
C
G
H
I
M
J
D
C
I
E
N
F
E
H
J
K
O
M

17b Fab light chain

Toggle Identical (AFK)

Envelope glycoprotein gp160

Toggle Identical (BGL)

Envelope glycoprotein gp160

Toggle Identical (CHM)

T-cell surface glycoprotein CD4

Toggle Identical (DIN)

17b Fab heavy chain

Toggle Identical (EJO)

Related Entries With Identical Sequence

1g9m.1 | 1g9n.1 | 1gc1.1 | 1rzj.1 | 1rzk.1 | 3j70.1 | 4h8w.1 | 4jm2.1 | 4rqs.1 | 4rqs.2 | 5a8h.1 | 5vn8.1 | 6ch9.1 | 6edu.1 | 6muf.1 | 6mug.1 | 6okp.1 | 6opn.1 | 6opo.1 | 6opp.1 | 6opq.1 | 6u59.1 | 6x5b.1 | 6x5c.1 | 7txd.1 | 8d5c.1