SMTL ID : 5vpl.1

CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.57, L.58, E.60, E.92 Ligands: EDO.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.57, A:L.58, A:E.60, A:E.92, H2O.1

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: A.50, Y.51, Q.134, T.135, H.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.50 EDO.4: 7 residues within 4Å: Chain A: R.27, M.28, F.38, D.57, E.60, E.92 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.28, A:E.60 EDO.5: 4 residues within 4Å: Chain B: D.92, F.94, Y.96 Chain C: R.103 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Water bridges: A:D.199, A:D.199, A:S.200, A:S.200 Hydrogen bonds: B:Y.96 EDO.6: 7 residues within 4Å: Chain B: Q.37, K.39, K.45, P.59, F.62, E.81, D.82 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.37, B:K.39, B:E.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chruszcz, M. et al., Molecular Determinants For Antibody Binding On Group 1 House Dust Mite Allergens. J.Biol.Chem. (2012)

Release Date

2017-05-24

Peptides

Der f 1 variant: A
4C1 - LIGHT CHAIN: B
4C1 - HEAVY CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Der f 1 variant

4C1 - LIGHT CHAIN

4C1 - HEAVY CHAIN

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