SMTL ID : 5vx3.2 (1 other biounit)

Bcl-xL in complex with Bim-h3Pc-RT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-2-2-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: S.19, Y.20, S.23, A.33, K.36, Q.37, R.40 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:Q.37, A:R.40, A:R.40 Water bridges: A:Y.20 EDO.2: 6 residues within 4Å: Chain A: G.135, G.136, W.137, D.138 Chain C: G.1, P.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.135, A:W.137, A:D.138 Water bridges: A:Q.31 EDO.3: 2 residues within 4Å: Chain A: D.138, E.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.138 EDO.4: 3 residues within 4Å: Chain A: T.64, G.66, T.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.64 EDO.5: 3 residues within 4Å: Chain A: V.112, S.113 Chain C: W.29 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain C: P.65, G.66, T.67, A.68, Y.69, W.118 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.66, C:A.68, C:Y.69 Water bridges: C:Q.70 EDO.7: 1 residues within 4Å: Chain D: T.22 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brouwer, J.M. et al., Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design. Mol. Cell (2017)

Release Date

2017-11-15

Peptides

Bcl-2-like protein 1: AC
Bcl-2-like protein 11: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
G

B
D

D
H

Bcl-2-like protein 1

Bcl-2-like protein 11

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