- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x 7V3: (S)-(4-chlorophenyl)-phenyl-methanamine(Non-covalent)
7V3.2: 9 residues within 4Å:- Chain A: A.49, L.51, I.215, Y.224, Y.228, A.230, F.242, G.313
- Ligands: FAD.1
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.49, A:L.51, A:I.215, A:Y.224, A:Y.224, A:Y.224, A:Y.224, A:Y.228
- Hydrogen bonds: A:G.313
- pi-Stacking: A:Y.228, A:F.242
7V3.6: 8 residues within 4Å:- Chain B: A.49, L.51, I.215, Y.224, Y.228, F.242, G.313
- Ligands: FAD.5
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:A.49, B:I.215, B:Y.224, B:Y.224, B:Y.224, B:Y.228, B:Y.228, B:F.242, B:F.242
- Hydrogen bonds: B:Y.224
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 4 residues within 4Å:- Chain A: P.41, F.42, T.43, T.280
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.280
MPD.7: 6 residues within 4Å:- Chain B: D.37, R.38, K.163, W.185, E.249
- Ligands: FAD.5
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:R.38, B:W.185, B:W.185
MPD.8: 2 residues within 4Å:- Chain B: F.39, F.159
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.39
- Hydrogen bonds: B:F.159
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: T.118, P.119, R.120
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.118, A:T.118, A:R.120
- Salt bridges: A:R.120
SO4.9: 3 residues within 4Å:- Chain B: T.118, P.119, R.120
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.118, B:R.120
- Salt bridges: B:R.120
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasukawa, K. et al., Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine. To Be Published
- Release Date
- 2018-01-17
- Peptides
- D-amino-acid oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x 7V3: (S)-(4-chlorophenyl)-phenyl-methanamine(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasukawa, K. et al., Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine. To Be Published
- Release Date
- 2018-01-17
- Peptides
- D-amino-acid oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D