- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 4 residues within 4Å:- Chain A: Y.224, Y.228, G.313
- Ligands: FAD.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.224, A:Y.224, A:Y.228, A:Y.228
- Hydrogen bonds: A:G.313
MPD.3: 5 residues within 4Å:- Chain A: P.41, D.46, R.142, K.204, Y.279
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:R.142, A:Y.279
- Hydrogen bonds: A:P.41, A:Y.279
MPD.4: 5 residues within 4Å:- Chain A: D.37, R.38, K.163, W.185, E.249
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.185
- Hydrogen bonds: A:K.163, A:E.249
MPD.6: 3 residues within 4Å:- Chain A: D.37, L.161, K.163
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:D.37
MPD.9: 4 residues within 4Å:- Chain B: N.251, N.252, I.253, H.256
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.256
MPD.10: 5 residues within 4Å:- Chain B: D.46, R.142, K.204, Y.279
- Ligands: MPD.11
No protein-ligand interaction detected (PLIP)MPD.11: 6 residues within 4Å:- Chain B: P.41, F.42, V.47, Y.279, T.280
- Ligands: MPD.10
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.42
- Hydrogen bonds: B:T.280
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: T.118, P.119, R.120
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.118, A:T.118, A:R.120, A:E.121
- Salt bridges: A:R.120
SO4.12: 6 residues within 4Å:- Chain A: L.112, G.113
- Chain B: T.118, P.119, R.120, E.121
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.118, B:R.120, A:G.113
- Salt bridges: B:R.120
- 1 x 7V3: (S)-(4-chlorophenyl)-phenyl-methanamine(Non-covalent)
7V3.8: 10 residues within 4Å:- Chain B: A.49, L.51, I.215, Y.224, Y.228, I.229, A.230, F.242, G.313
- Ligands: FAD.7
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:A.49, B:L.51, B:I.215, B:Y.224, B:Y.228, B:F.242
- Hydrogen bonds: B:G.313
- pi-Stacking: B:Y.224, B:Y.224, B:F.242
- Halogen bonds: B:I.229
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasukawa, K. et al., Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine. To Be Published
- Release Date
- 2018-01-17
- Peptides
- D-amino-acid oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x 7V3: (S)-(4-chlorophenyl)-phenyl-methanamine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yasukawa, K. et al., Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine. To Be Published
- Release Date
- 2018-01-17
- Peptides
- D-amino-acid oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F