SMTL ID : 5x71.1

Crystal structure of Rice Dwarf Virus P5 in space group P212121

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 12 residues within 4Å: Chain A: Q.619, P.625, I.704, S.705, G.706, H.707, W.725, D.749, N.750, K.751, W.761, H.762 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.619, A:Q.619, A:I.704, A:G.706, A:H.707, A:D.749 Salt bridges: A:H.707, A:D.749, A:H.762 pi-Stacking: A:H.707, A:W.761, A:W.761, A:W.761 5GP.2: 13 residues within 4Å: Chain B: Q.619, P.625, I.704, S.705, G.706, H.707, W.725, M.729, D.749, N.750, K.751, W.761, H.762 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.619, B:Q.619, B:G.706, B:H.707, B:D.749, B:K.751 Salt bridges: B:H.707, B:D.749, B:H.762 pi-Stacking: B:W.761, B:W.761 pi-Cation interactions: B:H.707

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamichi, Y. et al., Crystal structure of the capping enzyme P5 from Rice Dwarf Virus. To Be Published

Release Date

2018-02-28

Peptides

mRNA capping enzyme P5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA capping enzyme P5

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