SMTL ID : 5xp7.2 (1 other biounit)

C-Src in complex with ATP-CHCl

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x 8C6: [(R)-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]-chloranyl-methyl]phosphonic acid(Non-covalent)

8C6.1: 19 residues within 4Å: Chain A: L.26, G.27, Q.28, G.29, C.30, F.31, G.32, V.34, A.46, K.48, T.91, E.92, M.94, S.98, A.143, N.144, L.146, D.157 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:F.31, A:K.48, A:T.91, A:E.92, A:M.94, A:A.143, A:N.144 Water bridges: A:C.30, A:C.30, A:S.98

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.144, D.157 Ligands: 8C6.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.157, H2O.3, H2O.6

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.180, V.214, P.217, G.218, M.219 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.180, A:G.218, A:M.219 Water bridges: A:R.213, A:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, F. et al., Remarkably Stereospecific Utilization of ATP alpha , beta-Halomethylene Analogues by Protein Kinases. J. Am. Chem. Soc. (2017)

Release Date

2017-09-06

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Proto-oncogene tyrosine-protein kinase Src

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