SMTL ID : 7ah3.1 (1 other biounit)

Kinase domain of cSrc in complex with a pyrazolopyrimidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x RCK: ~{N}-[(2-fluorophenyl)methyl]-6-(morpholin-4-ylmethylsulfanyl)-1-(2-phenylethyl)pyrazolo[3,4-d]pyrimidin-4-amine(Non-covalent)

RCK.1: 15 residues within 4Å: Chain A: L.26, V.34, A.46, K.48, M.67, V.76, I.89, T.91, E.92, Y.93, M.94, S.95, G.97, L.146, D.157 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.26, A:A.46, A:V.76, A:I.89, A:T.91, A:Y.93, A:L.146, A:D.157 Hydrogen bonds: A:K.48, A:T.91, A:T.91, A:M.94 Water bridges: A:D.101

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.39 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: C.236, P.237, P.238, E.239, C.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.239

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 1 residues within 4Å: Chain A: K.104 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dello Iacono, L. et al., Insights into the binding of pyrazolopyrimidines to Src kinase. To Be Published

Release Date

2021-10-06

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene tyrosine-protein kinase Src

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