SMTL ID : 5y8z.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 8Q3: 5-bromanyl-N-(3,6-dimethyl-1,2-benzoxazol-5-yl)-2-methoxy-benzenesulfonamide(Non-covalent)

8Q3.1: 9 residues within 4Å: Chain A: W.54, P.55, V.60, L.65, L.67, Y.112, N.113, I.119, M.122 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.54, A:V.60, A:L.65, A:L.67, A:L.67, A:I.119 Hydrogen bonds: A:N.113

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.73, A:K.75, A:T.76, A:T.76, A:T.76 EDO.3: 5 residues within 4Å: Chain A: P.115, G.116, V.120, L.121, E.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.116 Water bridges: A:E.124

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 4 residues within 4Å: Chain A: Q.51, F.52, W.54, M.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.51, A:W.54 NO3.5: 3 residues within 4Å: Chain A: P.59, G.81, T.82 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: Y.110, I.111, N.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.111

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain A: D.117, D.118 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.118, A:D.118 Water bridges: A:D.117, A:D.118, A:D.118, A:I.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structure-Based Discovery and Optimization of Benzo[ d]isoxazole Derivatives as Potent and Selective BET Inhibitors for Potential Treatment of Castration-Resistant Prostate Cancer (CRPC). J. Med. Chem. (2018)

Release Date

2018-06-13

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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