SMTL ID : 5y93.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x 8Q9: 2-[[5-[(5-bromanyl-2-methoxy-phenyl)sulfonylamino]-3-methyl-1,2-benzoxazol-6-yl]oxy]-N-(2-morpholin-4-ylethyl)ethanamide(Non-covalent)

8Q9.1: 10 residues within 4Å: Chain A: W.54, P.55, V.60, L.65, N.66, L.67, Y.112, N.113, I.119, M.122 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.54, A:V.60, A:L.67, A:I.119 Hydrogen bonds: A:N.113 Water bridges: A:L.65

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 3 residues within 4Å: Chain A: Y.71, K.72, K.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.72, A:K.75, A:K.75 NO3.3: 6 residues within 4Å: Chain A: H.7, H.8, H.9, H.10, L.11, V.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.9, A:H.9, A:H.10, A:L.11, A:V.12

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.73, A:K.75, A:T.76, A:T.76

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: Y.110, E.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.124, A:E.124 GOL.6: 3 residues within 4Å: Chain A: R.31, W.93, N.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structure-Based Discovery and Optimization of Benzo[ d]isoxazole Derivatives as Potent and Selective BET Inhibitors for Potential Treatment of Castration-Resistant Prostate Cancer (CRPC). J. Med. Chem. (2018)

Release Date

2018-06-13

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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