SMTL ID : 5y94.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 8QC: 5-bromanyl-2-methoxy-N-[3-methyl-6-(methylamino)-1,2-benzoxazol-5-yl]benzenesulfonamide(Non-covalent)

8QC.1: 9 residues within 4Å: Chain A: W.54, P.55, V.60, L.65, L.67, Y.112, N.113, I.119, M.122 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.54, A:V.60 Hydrogen bonds: A:N.113

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: Q.51, F.52, W.54, M.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.51, A:W.54 NO3.3: 5 residues within 4Å: Chain A: P.20, P.59, D.79, G.81, T.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.81

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108, I.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.75, A:T.76, A:T.76, A:N.108

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: Y.110, I.111, N.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structure-Based Discovery and Optimization of Benzo[ d]isoxazole Derivatives as Potent and Selective BET Inhibitors for Potential Treatment of Castration-Resistant Prostate Cancer (CRPC). J. Med. Chem. (2018)

Release Date

2018-06-13

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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