SMTL ID : 5yqh.1 (3 other biounits)

The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: I.98, L.99, H.106, R.110, L.113, F.161, L.246, A.249, G.250, T.253, T.254, V.296, F.299, R.301, L.324, G.351, F.352, G.353, V.356, H.357, C.359, V.360, G.361, V.364, A.365 Ligands: 8ZX.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:I.98, A:L.99, A:L.113, A:F.161, A:L.246, A:A.249, A:V.296, A:L.324, A:F.352, A:V.360, A:V.364 Water bridges: A:H.357 Salt bridges: A:H.106, A:R.110, A:R.301, A:H.357, A:H.357 Metal complexes: A:C.359

3 x 8ZX: 4-methoxybenzamide(Non-covalent)

8ZX.2: 11 residues within 4Å: Chain A: R.93, S.96, I.98, L.99, F.183, L.241, R.244, S.245, S.248, A.249 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.98, A:L.99, A:L.99, A:A.249 Hydrogen bonds: A:R.244 Water bridges: A:L.97 8ZX.3: 6 residues within 4Å: Chain A: K.90, P.91, W.92, R.93, P.94, P.95 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.94 Water bridges: A:W.92 8ZX.4: 7 residues within 4Å: Chain A: E.154, L.176, P.177, G.180, D.252, R.392, L.397 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.176 Water bridges: A:N.256, A:N.394

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: R.93, Y.178, Q.204, R.244 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: S.114, L.117, S.118, C.359, V.360, Q.362 Ligands: SO4.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.110, A:S.114, A:Q.362 Water bridges: A:L.363

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 5 residues within 4Å: Chain A: R.79, K.87, K.88, E.316, G.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.316 Salt bridges: A:R.79, A:K.87, A:K.88 SO4.8: 2 residues within 4Å: Chain A: P.104, R.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.104 Water bridges: A:R.108 Salt bridges: A:R.108 SO4.9: 3 residues within 4Å: Chain A: R.110, S.114 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.114 Salt bridges: A:R.110 SO4.10: 2 residues within 4Å: Chain A: H.66, S.354 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.354, A:S.354 Water bridges: A:N.70, A:N.70 Salt bridges: A:H.66 SO4.11: 4 residues within 4Å: Chain A: F.268, P.269, G.270, E.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.270, A:E.271 SO4.12: 3 residues within 4Å: Chain A: P.331, D.336, P.337 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.336, A:D.336, A:D.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, T. et al., The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid. To Be Published

Release Date

2019-02-27

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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