SMTL ID : 5z1s.1

Crystal Structure Analysis of the BRD4(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x EFM: 5-bromo-2-methoxy-N-(6-methoxy-2,2-dimethyl-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-7-yl)benzene-1-sulfonamide(Non-covalent)

EFM.1: 12 residues within 4Å: Chain A: W.54, P.55, F.56, V.60, L.65, L.67, Y.70, Y.112, N.113, D.118, I.119, M.122 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.54, A:F.56, A:V.60, A:L.65, A:Y.70, A:I.119 Hydrogen bonds: A:N.113, A:N.113 Water bridges: A:L.65

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 3 residues within 4Å: Chain A: Y.71, K.72, K.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.71, A:K.72, A:K.75 NO3.3: 6 residues within 4Å: Chain A: H.7, H.8, H.9, H.10, L.11, V.12 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.7, A:H.8, A:H.9, A:H.10, A:L.11, A:V.12, A:V.12

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.73, A:K.75, A:T.76, A:T.76 EDO.5: 2 residues within 4Å: Chain A: Q.51, W.54 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.51 EDO.6: 4 residues within 4Å: Chain A: T.23, P.59, G.81, T.82 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: R.31, W.93, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:N.94 Water bridges: A:N.94, A:A.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Q. et al., Y08060: A Selective BET Inhibitor for Treatment of Prostate Cancer. Acs Med.Chem.Lett. (2018)

Release Date

2019-01-02

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence