SMTL ID : 5z1t.1

Crystal Structure Analysis of the BRD4(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x EFN: 5-bromo-N-(6-hydroxy-2,2-dimethyl-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-7-yl)-2-methoxybenzene-1-sulfonamide(Non-covalent)

EFN.1: 12 residues within 4Å: Chain A: W.54, P.55, F.56, V.60, L.65, L.67, Y.112, N.113, D.118, I.119, M.122 Ligands: EDO.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.54, A:F.56, A:V.60 Hydrogen bonds: A:N.113, A:N.113 Water bridges: A:L.65

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 3 residues within 4Å: Chain A: Y.71, K.72, K.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.71, A:K.72, A:K.75 NO3.3: 6 residues within 4Å: Chain A: H.7, H.8, H.9, H.10, L.11, V.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.9, A:H.10, A:L.11, A:V.12

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.73, A:K.75, A:T.76, A:T.76, A:T.76 EDO.5: 5 residues within 4Å: Chain A: N.113, D.117, D.118, I.119 Ligands: EFN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.117, A:I.119 Water bridges: A:N.113, A:K.114

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: P.19, P.20, P.21, P.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.77 GOL.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Q. et al., Y08060: A Selective BET Inhibitor for Treatment of Prostate Cancer. Acs Med.Chem.Lett. (2018)

Release Date

2019-01-02

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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