SMTL ID : 5z6s.1

Crystal structure of the PPARgamma-LBD complexed with compound DS-6930

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RTF: 3-[[6-(3,5-dimethylpyridin-2-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid(Non-covalent)

RTF.1: 18 residues within 4Å: Chain A: I.55, L.61, G.64, E.65, R.86, I.87, G.90, C.91, R.94, S.95, Y.133, L.136, I.147, M.154, F.169, M.170, K.173, H.255 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.55, A:L.61, A:R.86, A:R.94, A:L.136 Water bridges: A:S.95 Salt bridges: A:K.173, A:H.255

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.40, M.140, N.141, N.181 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.203, P.204 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shinozuka, T. et al., Discovery of DS-6930, a potent selective PPAR gamma modulator. Part II: Lead optimization. Bioorg. Med. Chem. (2018)

Release Date

2018-10-17

Peptides

Peroxisome proliferator-activated receptor gamma: A
Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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