- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 3 residues within 4Å:- Chain A: L.535, H.536, S.537
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.536, A:S.537
SO4.11: 1 residues within 4Å:- Chain A: R.728
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.728
SO4.18: 5 residues within 4Å:- Chain A: S.641, K.666
- Chain B: S.85, K.86, S.87
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Water bridges: A:S.641, A:S.641, A:K.666
- Hydrogen bonds: B:K.86, B:S.87
SO4.19: 2 residues within 4Å:- Chain B: R.531, H.556
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.556
- Water bridges: B:S.555, B:H.556
- Salt bridges: B:R.531
SO4.20: 2 residues within 4Å:- Chain B: R.714, K.736
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.714, B:K.736
SO4.21: 2 residues within 4Å:- Chain B: P.42, T.43
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.43, B:T.43
SO4.22: 3 residues within 4Å:- Chain B: H.536, S.537
- Ligands: NAG.13
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.537
SO4.23: 5 residues within 4Å:- Chain A: Y.334
- Chain B: T.510, L.535, H.536
- Ligands: L07.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.510
- Water bridges: B:T.510
- Salt bridges: B:H.536
SO4.24: 3 residues within 4Å:- Chain B: Q.474, K.498, E.521
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.474
- Salt bridges: B:K.498
- 2 x L07: 2-propyl[1,3]thiazolo[4,5-c]quinolin-4-amine(Non-covalent)
L07.16: 11 residues within 4Å:- Chain A: T.510, D.533, L.535, G.562, I.563, T.564
- Chain B: F.327, F.329, Y.334, V.359, F.386
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.327, B:F.329, B:F.329, B:V.359, B:F.386, A:T.510
- pi-Stacking: B:Y.334, B:F.386, B:F.386
- Hydrogen bonds: A:D.533, A:T.564, A:T.564
L07.17: 11 residues within 4Å:- Chain A: F.329, Y.334, V.359, F.386
- Chain B: T.510, D.533, L.535, G.562, I.563, T.564
- Ligands: SO4.23
12 PLIP interactions:4 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:T.510, B:L.535, A:F.329, A:F.329, A:V.359, A:V.359, A:F.386
- Hydrogen bonds: B:D.533, B:T.564
- pi-Stacking: A:Y.334, A:F.386, A:F.386
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 2 x L07: 2-propyl[1,3]thiazolo[4,5-c]quinolin-4-amine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A