- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x C09: 2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-4-amine(Non-covalent)
C09.8: 11 residues within 4Å:- Chain A: T.510, D.533, L.535, G.562, I.563, T.564
- Chain B: F.327, F.329, Y.334, V.359, F.386
14 PLIP interactions:6 interactions with chain A, 8 interactions with chain B- Hydrophobic interactions: A:T.510, A:L.535, A:I.563, B:F.327, B:F.329, B:V.359, B:V.359, B:F.386
- Hydrogen bonds: A:D.533, A:T.564, A:T.564
- pi-Stacking: B:Y.334, B:F.386, B:F.386
C09.16: 11 residues within 4Å:- Chain A: F.327, F.329, Y.334, V.359, F.386
- Chain B: T.510, D.533, L.535, G.562, I.563, T.564
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.327, A:F.329, A:V.359, A:F.386, B:T.510
- pi-Stacking: A:Y.334, A:F.386, A:F.386
- Hydrogen bonds: B:D.533, B:T.564
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 3 residues within 4Å:- Chain A: L.535, H.536, S.537
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.537
- Salt bridges: A:H.536
SO4.10: 5 residues within 4Å:- Chain A: L.363, K.364, S.365, N.391, M.394
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.365, A:N.391
- Salt bridges: A:K.364
SO4.17: 5 residues within 4Å:- Chain A: S.641, K.666
- Chain B: S.85, K.86, S.87
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.86, B:S.87, B:S.87
SO4.18: 4 residues within 4Å:- Chain B: H.536, S.537, T.538
- Ligands: NAG.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.537, B:S.537, B:T.538
SO4.19: 2 residues within 4Å:- Chain B: R.531, H.556
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.556
- Salt bridges: B:R.531
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x C09: 2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-4-amine(Non-covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A