- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 21 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 4 residues within 4Å:- Chain A: H.536, S.537, T.538, M.566
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain A: I.41, P.42, T.43
Ligand excluded by PLIPSO4.12: 4 residues within 4Å:- Chain A: R.531, H.556, Q.559
- Chain B: N.529
Ligand excluded by PLIPSO4.13: 2 residues within 4Å:- Chain A: R.728, K.754
Ligand excluded by PLIPSO4.14: 5 residues within 4Å:- Chain A: S.188, K.190, Y.209, Y.211, Y.449
Ligand excluded by PLIPSO4.15: 3 residues within 4Å:- Chain A: Q.474, K.498, E.521
Ligand excluded by PLIPSO4.16: 3 residues within 4Å:- Chain A: R.714, K.736, R.762
Ligand excluded by PLIPSO4.17: 1 residues within 4Å:- Chain A: H.493
Ligand excluded by PLIPSO4.18: 7 residues within 4Å:- Chain A: S.85, K.86, S.87, R.454
- Chain B: S.641, F.642, K.666
Ligand excluded by PLIPSO4.19: 5 residues within 4Å:- Chain A: K.364, S.365, N.391, M.394
- Ligands: NAG.5
Ligand excluded by PLIPSO4.20: 6 residues within 4Å:- Chain A: R.354, V.379, D.381, V.403, D.405, Y.470
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain A: N.568, S.591, R.592, T.593
- Ligands: NAG.4
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain A: Y.719, Q.722
Ligand excluded by PLIPSO4.32: 4 residues within 4Å:- Chain B: H.536, S.537, T.538, M.566
Ligand excluded by PLIPSO4.33: 7 residues within 4Å:- Chain A: S.641, F.642, K.666
- Chain B: S.85, K.86, S.87, R.454
Ligand excluded by PLIPSO4.34: 5 residues within 4Å:- Chain B: S.188, K.190, Y.209, Y.211, Y.449
Ligand excluded by PLIPSO4.35: 3 residues within 4Å:- Chain B: I.41, P.42, T.43
Ligand excluded by PLIPSO4.36: 1 residues within 4Å:- Chain B: H.493
Ligand excluded by PLIPSO4.37: 3 residues within 4Å:- Chain B: R.714, K.736, R.762
Ligand excluded by PLIPSO4.38: 5 residues within 4Å:- Chain A: G.504, N.529
- Chain B: R.531, H.556, Q.559
Ligand excluded by PLIPSO4.39: 3 residues within 4Å:- Chain B: D.583, R.605, K.637
Ligand excluded by PLIP- 2 x 23G: GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE(Non-covalent)
23G.30: 14 residues within 4Å:- Chain A: T.510, D.533, L.535, G.562, I.563, T.564
- Chain B: Y.242, F.329, L.331, Q.332, Y.334, V.359, F.386, K.410
14 PLIP interactions:6 interactions with chain A, 8 interactions with chain B- Hydrogen bonds: A:G.562, A:T.564, A:T.564, A:T.564, B:Y.242, B:Q.332, B:Q.332
- Water bridges: A:D.533, B:Y.242, B:V.333
- Salt bridges: A:D.533
- pi-Stacking: B:Y.334, B:F.386, B:F.386
23G.31: 14 residues within 4Å:- Chain A: Y.242, F.329, L.331, Q.332, Y.334, V.359, F.386, K.410
- Chain B: T.510, D.533, L.535, G.562, I.563, T.564
12 PLIP interactions:6 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:G.562, B:T.564, B:T.564, B:T.564, A:Q.332, A:Q.332
- Water bridges: B:T.510, A:Y.334
- Salt bridges: B:D.533
- pi-Stacking: A:Y.334, A:F.386, A:F.386
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 21 x SO4: SULFATE ION(Non-functional Binders)
- 2 x 23G: GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Structural Analyses of Toll-like Receptor 7 Reveal Detailed RNA Sequence Specificity and Recognition Mechanism of Agonistic Ligands. Cell Rep (2018)
- Release Date
- 2019-01-30
- Peptides
- Toll-like receptor 7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A