SMTL ID : 6lw1.1

Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x EX3: 2-ethoxy-8-(5-fluoranylpyridin-3-yl)-6-methyl-9-[[4-[[(1S,4S)-5-methyl-2,5-diazabicyclo[2.2.1]heptan-2-yl]methyl]phenyl]methyl]purine(Non-covalent)

EX3.1: 16 residues within 4Å: Chain A: Y.242, N.243, F.327, F.329, E.330, L.331, Q.332, V.333, G.357, V.359, T.384, F.386 Chain B: F.484, F.485, S.508, Q.509 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:F.485, A:N.243, A:F.327, A:F.329, A:F.329, A:Q.332, A:V.359 Hydrogen bonds: A:Q.332 pi-Stacking: A:F.386 EX3.2: 16 residues within 4Å: Chain A: F.484, F.485, S.508, Q.509 Chain B: Y.242, N.243, F.327, F.329, E.330, L.331, Q.332, V.333, G.357, V.359, T.384, F.386 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:N.243, B:F.327, B:F.329, B:F.329, B:Q.332, B:V.359 Hydrogen bonds: B:Q.332 pi-Stacking: B:F.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tojo, S. et al., Structural analysis reveals TLR7 dynamics underlying antagonism. Nat Commun (2020)

Release Date

2020-11-11

Peptides

Toll-like receptor 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Toll-like receptor 7

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