SMTL ID : 6ajf.1

Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.1: 8 residues within 4Å: Chain A: D.772, T.904, P.905, N.906, R.907, I.930, K.931, A.932 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.905, A:N.906, A:N.906, A:R.907, A:K.931, A:A.932 Salt bridges: A:R.907 MHA.2: 6 residues within 4Å: Chain A: G.875, F.876, T.877, N.878, S.879, N.894 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.875, A:F.876, A:T.877, A:T.877, A:N.878, A:N.878, A:S.879, A:N.894, A:N.894

4 x L6T: alpha-D-glucopyranosyl 6-O-dodecyl-alpha-D-glucopyranoside(Non-covalent)

L6T.3: 16 residues within 4Å: Chain A: Q.53, F.56, Y.57, S.67, L.68, D.71, R.76, D.77, D.157, L.184, A.188, L.191, T.192, H.252, I.440, R.514 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.56, A:A.188, A:L.191, A:L.191 Hydrogen bonds: A:D.71, A:R.76, A:D.77, A:D.77, A:D.157, A:R.514 L6T.4: 8 residues within 4Å: Chain A: R.201, A.205, N.634, A.700, V.701, G.704, A.705, F.708 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.205, A:F.708 Hydrogen bonds: A:R.201, A:N.634, A:F.708 L6T.5: 12 residues within 4Å: Chain A: T.79, S.80, V.83, V.122, T.134, M.138, G.183, L.184, Q.455, F.458, F.465, R.466 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.184, A:F.458, A:R.466 Hydrogen bonds: A:T.134 L6T.6: 8 residues within 4Å: Chain A: I.241, V.245, F.248, T.249, Y.330, I.333, A.334, M.337 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.241, A:I.241, A:V.245, A:T.249, A:Y.330, A:Y.330, A:Y.330, A:I.333, A:M.337 Hydrogen bonds: A:F.248, A:T.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, B. et al., Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target. Cell (2019)

Release Date

2018-12-26

Peptides

Drug exporters of the RND superfamily-like protein,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Drug exporters of the RND superfamily-like protein,Endolysin

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