SMTL ID : 6ajj.1

Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with ICA38

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

2 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.1: 9 residues within 4Å: Chain A: D.772, Q.867, T.904, P.905, N.906, R.907, I.930, K.931, A.932 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.867, A:N.906, A:R.907, A:K.931, A:A.932, A:A.932 Salt bridges: A:R.907 MHA.2: 6 residues within 4Å: Chain A: G.875, F.876, T.877, N.878, S.879, N.894 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.877, A:T.877, A:N.878, A:N.878, A:S.879, A:S.879, A:N.894

5 x L6T: alpha-D-glucopyranosyl 6-O-dodecyl-alpha-D-glucopyranoside(Non-covalent)

L6T.3: 13 residues within 4Å: Chain A: Q.53, Y.57, S.67, L.68, D.71, R.76, D.77, D.157, L.184, L.191, T.192, H.252, F.253 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.191, A:T.192, A:F.253 Hydrogen bonds: A:D.71, A:R.76, A:D.77, A:D.77, A:D.157 L6T.4: 10 residues within 4Å: Chain A: R.201, A.205, L.209, D.448, N.634, A.700, V.701, G.704, A.705, F.708 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.205, A:L.209, A:F.708 Hydrogen bonds: A:R.201, A:N.634, A:F.708 L6T.5: 15 residues within 4Å: Chain A: T.79, S.80, V.83, V.122, D.132, T.134, V.135, M.138, F.147, G.183, L.184, L.187, Q.455, F.458, R.466 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.147, A:L.184, A:L.187, A:F.458, A:R.466 Hydrogen bonds: A:D.132, A:T.134 L6T.6: 3 residues within 4Å: Chain A: F.248, T.249, Y.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.249, A:Y.330 Hydrogen bonds: A:F.248 L6T.7: 8 residues within 4Å: Chain A: T.298, R.301, T.302, V.304, F.305, V.311, L.594, R.666 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.311 Hydrogen bonds: A:R.301, A:R.301, A:L.594, A:R.666, A:R.666 Salt bridges: A:R.301, A:R.301

1 x J9E: 4,6-difluoro-N-(spiro[5.5]undecan-3-yl)-1H-indole-2-carboxamide(Non-covalent)

J9E.8: 12 residues within 4Å: Chain A: I.262, I.266, D.269, Y.270, F.273, I.310, V.651, G.654, L.655, D.658, Y.659, F.662 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.269, A:Y.270, A:F.273, A:F.273, A:I.310, A:L.655, A:Y.659, A:F.662 Hydrogen bonds: A:D.658, A:Y.659

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, B. et al., Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target. Cell (2019)

Release Date

2018-12-26

Peptides

Drug exporters of the RND superfamily-like protein,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Drug exporters of the RND superfamily-like protein,Endolysin

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