SMTL ID : 6ajh.1

Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with AU1235

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

monomer

Ligands

1 x 9ZF: 1-(2-adamantyl)-3-[2,3,4-tris(fluoranyl)phenyl]urea(Non-covalent)

9ZF.1: 13 residues within 4Å: Chain A: I.262, I.266, D.269, Y.270, S.306, I.310, V.651, G.654, L.655, D.658, Y.659, F.662, L.699 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.266, A:D.269, A:Y.270, A:L.655, A:Y.659, A:F.662, A:F.662, A:L.699 Hydrogen bonds: A:D.269, A:D.658, A:D.658, A:D.658

5 x L6T: alpha-D-glucopyranosyl 6-O-dodecyl-alpha-D-glucopyranoside(Non-covalent)

L6T.2: 15 residues within 4Å: Chain A: Q.53, F.56, Y.57, S.67, L.68, D.71, R.76, D.77, D.157, L.184, L.191, H.252, F.253, F.254, I.440 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.56, A:L.191, A:L.191, A:F.253, A:I.440 Hydrogen bonds: A:S.67, A:D.71, A:R.76, A:D.77, A:D.77, A:D.157 L6T.3: 13 residues within 4Å: Chain A: T.79, S.80, V.83, V.122, D.132, T.134, V.135, M.138, G.183, Q.455, F.458, F.465, R.466 No protein-ligand interaction detected (PLIP) L6T.4: 7 residues within 4Å: Chain A: Q.10, R.301, T.302, F.305, L.594, A.595, R.666 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.301, A:R.301, A:T.302, A:R.666, A:R.666 Salt bridges: A:R.301 L6T.5: 5 residues within 4Å: Chain A: H.628, G.629, L.632, M.633 Ligands: MHA.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.632 Hydrogen bonds: A:H.628, A:L.632 L6T.6: 7 residues within 4Å: Chain A: A.205, N.634, A.700, G.704, A.705, F.708, D.710 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.205, A:F.708 Hydrogen bonds: A:N.634, A:F.708

3 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.7: 8 residues within 4Å: Chain A: D.772, T.904, P.905, N.906, R.907, I.930, K.931, A.932 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.906, A:N.906, A:R.907, A:K.931, A:A.932 Salt bridges: A:R.907 MHA.8: 6 residues within 4Å: Chain A: G.875, F.876, T.877, N.878, S.879, N.894 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.878, A:N.878, A:S.879, A:S.879, A:N.894 MHA.9: 5 residues within 4Å: Chain A: G.627, G.629, S.630, G.631 Ligands: L6T.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.629, A:S.630, A:G.631, A:L.632 Salt bridges: A:H.628

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, B. et al., Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target. Cell (2019)

Release Date

2018-12-26

Peptides

Drug exporters of the RND superfamily-like protein,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Drug exporters of the RND superfamily-like protein,Endolysin

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