SMTL ID : 6aji.1

Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with Rimonabant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x AY6: 5-(4-chlorophenyl)-1-(2,4-dichlorophenyl)-4-methyl-N-(piperidin-1-yl)-1H-pyrazole-3-carboxamide(Non-covalent)

AY6.1: 15 residues within 4Å: Chain A: V.258, L.261, I.266, F.273, I.332, V.651, G.654, L.655, D.658, Y.659, F.662, L.699, V.702, A.703, L.721 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.261, A:I.266, A:F.273, A:I.332, A:V.651, A:Y.659, A:F.662, A:F.662, A:L.721 Hydrogen bonds: A:D.658 Salt bridges: A:D.658

3 x L6T: alpha-D-glucopyranosyl 6-O-dodecyl-alpha-D-glucopyranoside(Non-covalent)

L6T.2: 15 residues within 4Å: Chain A: Q.53, F.56, Y.57, S.67, L.68, D.71, R.76, D.77, D.157, L.184, A.188, T.192, F.253, I.440, R.514 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.56, A:L.184, A:F.253, A:I.440 Hydrogen bonds: A:S.67, A:D.71, A:R.76, A:D.77, A:D.77, A:D.157, A:R.514 L6T.3: 9 residues within 4Å: Chain A: T.79, S.80, V.83, G.183, L.187, Q.455, F.458, F.465, R.466 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.83, A:L.187, A:F.458 L6T.4: 13 residues within 4Å: Chain A: I.45, L.47, G.48, G.196, Q.199, E.203, A.228, G.232, I.235, L.239, Q.256, L.264, I.268 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.203, A:A.228, A:I.235, A:L.264, A:I.268 Hydrogen bonds: A:I.45, A:I.45, A:G.48, A:G.196, A:Q.256

2 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.5: 8 residues within 4Å: Chain A: D.772, T.904, P.905, N.906, R.907, I.930, K.931, A.932 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.906, A:R.907, A:K.931, A:A.932 Salt bridges: A:R.907 MHA.6: 6 residues within 4Å: Chain A: G.875, F.876, T.877, N.878, S.879, N.894 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.877, A:N.878, A:N.878, A:S.879, A:S.879, A:N.894, A:N.894

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, B. et al., Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target. Cell (2019)

Release Date

2018-12-26

Peptides

Drug exporters of the RND superfamily-like protein,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Drug exporters of the RND superfamily-like protein,Endolysin

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