SMTL ID : 6aom.1 (1 other biounit)

Structure of molecular chaperone Grp94 bound to selective inhibitor methyl 2-[2-(2-benzylphenyl)ethyl]-3-chloro-4,6-dihydroxybenzoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

monomer

Ligands

8 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.1: 3 residues within 4Å: Chain A: E.64, K.68, Y.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.64 P33.2: 4 residues within 4Å: Chain A: K.70, T.81, W.215 Ligands: P33.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.70, A:T.81, A:T.81 P33.3: 4 residues within 4Å: Chain A: T.145, R.170, T.181 Ligands: P33.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.145, A:R.170, A:T.173, A:T.181 P33.4: 2 residues within 4Å: Chain A: L.50, T.54 No protein-ligand interaction detected (PLIP) P33.5: 3 residues within 4Å: Chain A: K.147, N.149, D.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.147, A:K.147 P33.6: 4 residues within 4Å: Chain A: R.89, D.151, T.152, H.154 No protein-ligand interaction detected (PLIP) P33.7: 6 residues within 4Å: Chain A: N.16, R.17, M.19, K.20, L.21, S.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.17, A:K.20, A:S.160 Water bridges: A:D.159 P33.8: 1 residues within 4Å: Chain A: R.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.17

1 x VC5: methyl 2-[2-(2-benzylphenyl)ethyl]-3-chloro-4,6-dihydroxybenzoate(Non-covalent)

VC5.9: 14 residues within 4Å: Chain A: L.37, N.40, D.43, A.44, K.47, D.82, V.85, G.86, M.87, N.95, L.96, F.132, T.178, I.180 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.43, A:K.47, A:L.96 Hydrogen bonds: A:L.37, A:D.82 Water bridges: A:D.82, A:G.84, A:G.86

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 6 residues within 4Å: Chain A: K.8, E.157, S.158, D.159, E.162, S.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.8, A:K.8, A:D.159, A:D.159, A:S.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crowley, V.M. et al., Second Generation Grp94-Selective Inhibitors Provide Opportunities for the Inhibition of Metastatic Cancer. Chemistry (2017)

Release Date

2017-10-11

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin

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