SMTL ID : 6asp.2 (1 other biounit)

Structure of Grp94 with methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1 H-imidazol-2-yl)ethyl)-4,6-dihydroxybenzoate, a Grp94-selective inhibitor and promising therapeutic lead for treating myocilin-associated glaucoma

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

4 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.1: 3 residues within 4Å: Chain A: E.64, K.68, Y.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.64, A:K.68 P33.2: 5 residues within 4Å: Chain A: T.145, R.170, T.173, T.181 Ligands: P33.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.170, A:R.170, A:T.173, A:T.173 P33.3: 5 residues within 4Å: Chain A: K.70, H.79, T.81, T.179 Ligands: P33.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.81 P33.4: 2 residues within 4Å: Chain A: K.70, W.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: K.8, K.141, E.157, S.158, D.159, E.162, F.163, S.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.8, A:K.141, A:D.159, A:S.164

1 x V2C: methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1 H-imidazol-2-yl)ethyl)-4,6-dihydroxybenzoate(Non-covalent)

V2C.6: 16 residues within 4Å: Chain A: N.40, A.41, A.44, D.82, V.85, G.86, M.87, N.95, L.96, I.99, G.129, V.130, F.132, Y.133, T.178, I.180 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.40, A:L.96, A:I.99, A:V.130, A:Y.133 Hydrogen bonds: A:N.40, A:D.82, A:G.86, A:N.95, A:T.178 Water bridges: A:G.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huard, D.J.E. et al., Trifunctional High-Throughput Screen Identifies Promising Scaffold To Inhibit Grp94 and Treat Myocilin-Associated Glaucoma. ACS Chem. Biol. (2018)

Release Date

2018-04-18

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endoplasmin

Related Entries With Identical Sequence