SMTL ID : 9ck0.1

Cocrystal of PPARg LBD and NFKBIB / IKBB peptide with agonist GW1929

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDK: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid(Non-covalent)

EDK.1: 17 residues within 4Å: Chain A: I.61, I.80, F.81, G.83, C.84, Q.85, S.88, H.122, Y.126, L.129, I.140, F.159, F.162, M.163, H.248, L.268, Y.272 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.61, A:Q.85, A:Y.126, A:L.129, A:I.140, A:F.159, A:F.162, A:F.162, A:F.162 Hydrogen bonds: A:S.88, A:S.88, A:H.248, A:Y.272 Salt bridges: A:H.122, A:H.248 pi-Stacking: A:F.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemetchek, M.D. et al., Cocrystal of PPARg LBD with NFKBIB / IKBB peptide containing N-anchor motif LxxLL and agonist GW1929. To Be Published

Release Date

2024-07-17

Peptides

Peroxisome proliferator-activated receptor gamma: A
NF-kappa-B inhibitor beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

NF-kappa-B inhibitor beta

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