SMTL ID : 6awr.1

Structure of PR 10 Allergen Ara h 8.01 in complex with ANS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x 2AN: 8-ANILINO-1-NAPHTHALENE SULFONATE(Non-covalent)

2AN.1: 11 residues within 4Å: Chain A: V.37, L.55, I.57, I.66, H.68, Y.82, V.84, A.89, F.99, K.138, L.142 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.37, A:L.55, A:I.57, A:I.66, A:Y.82, A:V.84, A:F.99, A:K.138, A:L.142 Salt bridges: A:H.68, A:K.138 pi-Stacking: A:H.68, A:H.68 pi-Cation interactions: A:K.138 2AN.5: 9 residues within 4Å: Chain A: L.151, A.152 Chain B: I.34, I.66, K.134, A.137, K.138, G.141, L.142 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.34, B:I.66, B:A.137, B:L.142 pi-Cation interactions: B:K.138

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: P.31, I.34, D.35, V.37 Ligands: NA.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.34, A:V.37 NA.4: 3 residues within 4Å: Chain A: P.31, K.32 Ligands: NA.2 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.31 Water bridges: B:K.32 NA.6: 4 residues within 4Å: Chain B: P.31, I.34, D.35, V.37 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.35

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: K.32 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.32, B:K.38 Water bridges: B:K.38, B:K.38 SO4.7: 4 residues within 4Å: Chain B: E.9, I.10, T.11, R.144 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.9, B:T.11 Water bridges: B:T.11, B:R.144, B:R.144, B:R.144, B:R.144 Salt bridges: B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Offermann, L.R. et al., Structure of PR-10 Allergen Ara h 8.01. To Be Published

Release Date

2018-09-12

Peptides

Ara h 8 allergen: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ara h 8 allergen

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