SMTL ID : 6aws.1 (2 other biounits)

Structure of PR 10 Allergen Ara h 8.01 in complex with quercetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: P.31, I.34, D.35, V.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.31

3 x QUE: 3,5,7,3',4'-PENTAHYDROXYFLAVONE(Non-covalent)

QUE.2: 16 residues within 4Å: Chain A: D.8, E.9, I.10, M.23, Y.80, T.101, G.113, K.114, L.115, K.136, G.139, E.140, L.142, F.143 Ligands: UNL.3, QUE.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.10, A:I.10, A:T.101, A:L.115, A:L.142 Hydrogen bonds: A:E.9, A:K.114, A:L.115 QUE.6: 13 residues within 4Å: Chain A: A.26, T.30, D.36, V.37, L.55, I.57, E.59, I.66, H.68, A.89, K.138, L.142 Ligands: QUE.7 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.30, A:L.55, A:I.57, A:I.66, A:L.142, A:L.142 Hydrogen bonds: A:A.26, A:D.36, A:E.59, A:H.68, A:K.138 QUE.7: 13 residues within 4Å: Chain A: F.6, D.8, Y.82, F.99, L.115, L.117, L.132, G.135, K.136, G.139, L.142 Ligands: QUE.2, QUE.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.6, A:F.99, A:F.99, A:L.115, A:L.117 Hydrogen bonds: A:D.8, A:D.8

3 x UNL: UNKNOWN LIGAND

UNL.3: 6 residues within 4Å: Chain A: M.23, K.24, Y.80 Ligands: QUE.2, UNL.4, UNL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.23 UNL.4: 6 residues within 4Å: Chain A: M.23, K.24, K.53, Y.80 Ligands: UNL.3, UNL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.53, A:K.53 UNL.5: 4 residues within 4Å: Chain A: K.24, Y.80 Ligands: UNL.3, UNL.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Offermann, L.R. et al., Structure of PR-10 Allergen Ara h 8.01. To Be Published

Release Date

2018-09-12

Peptides

Ara h 8 allergen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ara h 8 allergen

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