SMTL ID : 6b41.1

Menin bound to M-525

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

1 x CJV: methyl {(1S,2R)-2-[(S)-cyano[1-({1-[4-({1-[4-(dimethylamino)butanoyl]azetidin-3-yl}sulfonyl)phenyl]azetidin-3-yl}methyl)piperidin-4-yl](3-fluorophenyl)methyl]cyclopentyl}carbamate(Covalent)

CJV.1: 23 residues within 4Å: Chain A: S.155, L.177, S.178, E.179, D.180, H.181, A.182, F.238, C.241, A.242, Y.276, M.278, N.282, Y.319, M.322, Y.323, G.326, C.329, R.330, W.341, E.363, V.367, V.371 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.177, A:F.238, A:F.238, A:A.242, A:M.322, A:E.363, A:V.371 Hydrogen bonds: A:Y.323

4 x 7PR: praseodymium triacetate(Non-covalent)(Non-functional Binders)

7PR.2: 4 residues within 4Å: Chain A: F.365, E.366, N.369, D.370 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:N.369 7PR.3: 6 residues within 4Å: Chain A: W.126, L.129, S.130, R.131, Y.133, W.198 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:W.126, A:L.129, A:W.198 7PR.4: 4 residues within 4Å: Chain A: L.249, H.250, D.285, L.289 0 PLIP interactions: 7PR.5: 0 residues within 4Å: (No contacts) 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Design of the First-in-Class, Highly Potent Irreversible Inhibitor Targeting the Menin-MLL Protein-Protein Interaction. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-01-24

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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