SMTL ID : 6bsl.1 (1 other biounit)

BMP1 complexed with a reverse hydroxymate - compound 22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 5 residues within 4Å: Chain A: R.111, I.117, R.119, F.130, L.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.111, A:R.119 Water bridges: A:K.132, A:K.132

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.94, H.98, H.104 Ligands: EVV.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.98, A:H.104 ZN.3: 4 residues within 4Å: Chain A: X.1, A.2, E.105, Q.193 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:?.1, A:E.105, A:E.105, H2O.4, H2O.6

1 x EVV: N-(2-ethoxy-4-{5-[({[(2R)-2-{(1R)-1-[formyl(hydroxy)amino]propyl}heptanoyl]amino}methyl)carbamoyl]furan-2-yl}benzene-1-carbonyl)-L-aspartic acid(Non-covalent)

EVV.4: 15 residues within 4Å: Chain A: R.62, G.65, C.67, S.68, Y.69, V.70, R.73, Q.78, A.79, H.94, E.95, H.98, W.103, H.104 Ligands: ZN.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.69, A:Y.69 Hydrogen bonds: A:S.68, A:S.68, A:R.73, A:A.79, A:E.95 Water bridges: A:C.67, A:R.73, A:H.104 Salt bridges: A:R.62, A:R.73, A:E.95 pi-Stacking: A:Y.69

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: Q.126, Y.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.126, A:Y.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallander, L.S. et al., Reverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1. ACS Med Chem Lett (2018)

Release Date

2018-08-08

Peptides

Bone morphogenetic protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bone morphogenetic protein 1

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