SMTL ID : 6btq.1 (1 other biounit)

BMP1 complexed with a hydroxamate - compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 4 residues within 4Å: Chain A: I.91, H.94, R.183 Ligands: E8S.5 No protein-ligand interaction detected (PLIP) SCN.2: 4 residues within 4Å: Chain A: G.161, I.162, F.163, L.164 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.94, H.98, H.104 Ligands: E8S.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.98, A:H.104 ZN.4: 4 residues within 4Å: Chain A: X.1, A.2, E.105, Q.193 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:?.1, A:E.105, A:E.105, H2O.4, H2O.5

1 x E8S: N~2~-[(2H-1,3-benzodioxol-5-yl)methyl]-N-hydroxy-N~2~-[(4-methoxyphenyl)sulfonyl]-3-thiophen-2-yl-D-alaninamide(Non-covalent)

E8S.5: 19 residues within 4Å: Chain A: C.64, G.65, C.66, N.85, C.86, I.91, H.94, E.95, H.98, H.104, N.129, Y.153, A.154, T.157, F.158, R.183 Ligands: SCN.1, ZN.3, EDO.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.91, A:Y.153, A:T.157, A:F.158 Hydrogen bonds: A:G.65, A:C.66, A:A.154

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain A: C.67, S.68, V.70, H.98, W.103, H.104 Ligands: E8S.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.68 Water bridges: A:S.68, A:H.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallander, L.S. et al., Reverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1. ACS Med Chem Lett (2018)

Release Date

2018-08-08

Peptides

Bone morphogenetic protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bone morphogenetic protein 1

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