SMTL ID : 6btq.2 (1 other biounit)

BMP1 complexed with a hydroxamate - compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 1 residues within 4Å: Chain A: F.163 No protein-ligand interaction detected (PLIP) SCN.2: 6 residues within 4Å: Chain A: T.4, S.5, P.7, V.10, E.139, L.141 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: X.1, A.2, E.105, Q.193 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:?.1, A:E.105, A:E.105, H2O.3, H2O.5 ZN.4: 3 residues within 4Å: Chain A: H.94, H.98, H.104 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.94, A:H.98, A:H.104, H2O.1, H2O.6

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: W.11, P.12, P.17, E.53, D.54, S.55, R.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.54, A:S.55, A:R.72 EDO.6: 7 residues within 4Å: Chain A: V.10, W.11, P.12, D.13, G.14, Y.198, K.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.13 EDO.7: 5 residues within 4Å: Chain A: F.18, R.33, M.36, R.37, F.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.47 Water bridges: A:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallander, L.S. et al., Reverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1. ACS Med Chem Lett (2018)

Release Date

2018-08-08

Peptides

Bone morphogenetic protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bone morphogenetic protein 1

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